ABOUT THIS RECORDspecies: Pinus taeda
source: miRBase, original name: pta-MIR171 (MI0005785)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGACGAGTCCATATC miRNA* TCTGTTATTGTTCTCGATACACA mismatches: 4 bulges: 2 |
pre-miRNA
TGTGATTGAGACGAGTCCATATCTTCTTCAGGCGAAGCCTCCACCACTCCAAAAGAACTGAATGCAGGTTTCCGATGCATCAATCTCAGTGCACTAGACA
ATATCATGTTGGAGGGTACAGACAGTGCCGCCATGTTTGGATGGAGGAGACCCAGGTCTGTTATTGTTCTCGATACACA
dot-bracket secondary structure
.(((((((((((((...((.((((.((((....)))).((((.(((.((((((.(.((((((((((.........))))).....))))).)........
.........(((..(((((.....))))).)))..))))))))).))))....)))).))...))).))))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
TGTGATTGAGACGAGTCCATATCTTCTTCAGGCGAAGCCTCCACCACTCCAAAAGAACTGAATGCAGGTTTCCGATGCATCAATCTCAGTGCACTAGACA
ATATCATGTTGGAGGGTACAGACAGTGCCGCCATGTTTGGATGGAGGAGACCCAGGTCTGTTATTGTTCTCGATACACA
dot-bracket secondary structure
.(((((((((((((...((.((((.((((....)))).((((.(((.((((((.(.((((((((((.........))))).....))))).)........
.........(((..(((((.....))))).)))..))))))))).))))....)))).))...))).))))))).))).
SIMILARITIES| miRBase no hits PMRD pta-miR171: 7e-99 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR171 from PMRD (MNEST051561) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
