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Species belonging to selected taxon:
Cryptomeria japonica
,
Picea abies
,
Picea engelmannii x Picea glauca
,
Picea glauca
,
Picea sitchensis
,
Pinus banksiana
,
Pinus contorta
,
Pinus pinaster
,
Pinus taeda
,
Pseudotsuga menziesii var. menziesii
ABOUT THIS RECORD
ID:
MNEST039431
species:
Pinus taeda
miRNA family:
MIR482
source:
miRBase, original name:
pta-MIR482c
(
MI0007052
)
Taxonomy by NCBI:
Pinus taeda
Pinus
Pinus
Pinaceae
Coniferales
Coniferopsida
Coniferophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTCCCTATTCCTCCCATT
miRNA*
TGGGAGGGTAGGAGAAGGCT
mismatches:
0
bulges:
2
View larger
pre-miRNA
AGGAG
TGGGAGGGTAGGAGAAGGCT
CTGTGGTGAGGTCTCAGTCATAATCTCATCAG
TCTTCCCTATTCCTCCCATT
CCT
dot-bracket secondary structure
(((((
((((((((((((.(((((((
....((((((((..........))))))))))
))))))))).))))))))))
)))
SIMILARITIES
miRBase
pab-MIR482a
:
0.00000002
PMRD
pta-miR482c
:
4e-40
microPC
miR482
:
0.00000006
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Lu S, Sun YH, Chiang VL,
Plant J. 55:131-151(2008).
,
"Stress-responsive microRNAs in Populus"