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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039431
species: Pinus taeda
miRNA family: MIR482
source: miRBase, original name: pta-MIR482c (MI0007052)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTATTCCTCCCATT

miRNA*
 TGGGAGGGTAGGAGAAGGCT

mismatches: 0
bulges: 2
View larger
pre-miRNA
 AGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTCCCATTCCT

dot-bracket secondary structure
(((((((((((((((((.(((((((....((((((((..........))))))))))))))))))).)))))))))))))


SIMILARITIES
miRBase pab-MIR482a: 0.00000002

PMRD pta-miR482c: 4e-40

microPC miR482: 0.00000006		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"



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