ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1311
source: miRBase, original name: pta-MIR1311 (MI0009708)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGAGTTTTGCCAGTTCCGCC miRNA* CGGGCTGGCATAACTCCGCCC mismatches: 3 bulges: 1 |
pre-miRNA
GGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTACTG
dot-bracket secondary structure
)(((((((..((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))..)))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
GGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTACTG
dot-bracket secondary structure
)(((((((..((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))..)))))))..
SIMILARITIES| miRBase pab-MIR1311: 1.0E-12 PMRD pta-miR1311: 1.0E-43 microPC miR1311: 9.0E-32 | UniProt no hits RFAM no hits |
Identical with: miR1311 from microPC (MNEST046251), pta-miR1311 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
