ABOUT THIS RECORDspecies: Pinus taeda
source: miRBase, original name: pta-MIR1315 (MI0009712)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCCTGTCAGGTTCCCA miRNA* GAGGCCCGTCAGGTTCCCAAC mismatches: 6 bulges: 0 |
pre-miRNA
TGTCAAGGATTTGGAGGCCCGTCAGGTTCCCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACCAGCCCAGGACAAGGCTTTGGAGGCCGGTCAGGTTC
CCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACTCTTCCAGGTCAAGGATTTGGAGGCCTGTCAGGTTCCCAACCGAGTCCGGGACTAT
dot-bracket secondary structure
)(((..((((((((..(((.(.(((((..((((....((((..((((.((((((((((((....))))(((.((((..((..((((..(((.....)))..
))))))..)))))))....))))))))..((((.....)))).))))..))))))))..))))).).)))..))))....))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
TGTCAAGGATTTGGAGGCCCGTCAGGTTCCCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACCAGCCCAGGACAAGGCTTTGGAGGCCGGTCAGGTTC
CCAACCGAGTCCGGGACCATCTGCAGACTGGAGCACTCTTCCAGGTCAAGGATTTGGAGGCCTGTCAGGTTCCCAACCGAGTCCGGGACTAT
dot-bracket secondary structure
)(((..((((((((..(((.(.(((((..((((....((((..((((.((((((((((((....))))(((.((((..((..((((..(((.....)))..
))))))..)))))))....))))))))..((((.....)))).))))..))))))))..))))).).)))..))))....))))..)))...
SIMILARITIES| miRBase pab-MIR3710: 3.0E-15 PMRD pta-miR1315: 1.0E-106 microPC no hits | UniProt sp|B0W6M9|SUR8_CULQU: 1.0E-5 RFAM no hits |
Identical with: pta-miR1315 from PMRD (MNEST051589) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
