ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR171_1
source: miRBase, original name: ppt-MIR171b (MI0005689)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATCACA miRNA* TGTTATTGGGCCCGCTCAATC mismatches: 2 bulges: 2 |
pre-miRNA
AGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTT
dot-bracket secondary structure
(((.(((((.((((((((..((((((((.((.(.(....(((((....)))))....).).)).)))))))).)).)))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
AGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTT
dot-bracket secondary structure
(((.(((((.((((((((..((((((((.((.(.(....(((((....)))))....).).)).)))))))).)).)))))).)))))))).
SIMILARITIES| miRBase ppt-MIR171a: 0.00000000007 PMRD ppt-miR171b: 3e-47 microPC miR171: 0.00000007 | UniProt no hits RFAM MIR171_1: 5e-46 |
Identical with: ppt-miR171b from PMRD (MNEST051383) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
