miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST039524
species: Physcomitrella patens
miRNA family: MIR536
source: miRBase, original name: ppt-MIR536c (MI0005687)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCGTGCCAAGCTTTGTGCTTT

miRNA*
CGCCAATGCTTGGCATGAATG

mismatches: 4
bulges: 1

View larger
pre-miRNA
TTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGG
ATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGG
GTTCTACTGGATCTCTAACATC


dot-bracket secondary structure
((((((((((((((.((..((((((..(.(((((.(((((((((((.(((((((((..(((((..(((.(((((..(((((.(((.((.........)).
))).))))).))))).((....)).......)))..)))))))))))))).))))))))))).))).)).)..))))))))))))))))..)))))).((
((((....))))))........



SIMILARITIES
miRBase no hits

PMRD ppt-miR536c: 2e-124

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ppt-miR536c from PMRD (MNEST051426)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence

references

[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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