ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR536
source: miRBase, original name: ppt-MIR536c (MI0005687)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGTGCCAAGCTTTGTGCTTT miRNA* CGCCAATGCTTGGCATGAATG mismatches: 4 bulges: 1 |
pre-miRNA
TTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGG
ATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGG
GTTCTACTGGATCTCTAACATC
dot-bracket secondary structure
((((((((((((((.((..((((((..(.(((((.(((((((((((.(((((((((..(((((..(((.(((((..(((((.(((.((.........)).
))).))))).))))).((....)).......)))..)))))))))))))).))))))))))).))).)).)..))))))))))))))))..)))))).((
((((....))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGG
ATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGG
GTTCTACTGGATCTCTAACATC
dot-bracket secondary structure
((((((((((((((.((..((((((..(.(((((.(((((((((((.(((((((((..(((((..(((.(((((..(((((.(((.((.........)).
))).))))).))))).((....)).......)))..)))))))))))))).))))))))))).))).)).)..))))))))))))))))..)))))).((
((((....))))))........
SIMILARITIES| miRBase no hits PMRD ppt-miR536c: 2e-124 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR536c from PMRD (MNEST051426) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
