miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST039552
species: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902d (MI0005938)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGGTCTGCATCGTAGC

miRNA*
TATGATGCAGATTCTTCATCT

mismatches: 0
bulges: 1

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pre-miRNA
AAGGATCCTCCCATTTGCGCCCACTGGGTTATGATGCAGATTCTTCATCTACTTCACTGGAGCTTCCACAAGTGGTGCACCAGATGAAGGTCTGCATCGT
AGC
CGAGAGGAAGCAAATTCTTCTGGACC


dot-bracket secondary structure
..((.(((....((((((..((.((.(((((((((((((((.((((((((........((.((..(((....))).)).)))))))))))))))))))))
)))
).)).))..))))))......)))))



SIMILARITIES
miRBase ppt-MIR902d: 3e-69

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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