miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Physcomitrella patens



ABOUT THIS RECORD

ID: MNEST039555
species: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902f (MI0005940)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGATGCAGATTCTTCATCT

miRNA*
ACGAAGATCTGCATCATAAC

mismatches: 4
bulges: 1

View larger
pre-miRNA
GAGAGAATGCTCTTTTGCCTTCGCTAAGATATGATGCAGATTCTTCATCTGCGGGATATTCTTGCGTGGTATAACAGACGAAGATCTGCATCATAACCAA
GCGGGAGTAAACATTGTGCTACC


dot-bracket secondary structure
(((((....)))))((((..(((((..(.((((((((((((.((((....(((((.....))))).((......))...)))))))))))))))).)..)
))))..)))).............



SIMILARITIES
miRBase ppt-MIR902f: 1e-65

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence

references

[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




Liczniki na strone;