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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST039606
species:
Physcomitrella patens
miRNA family:
MIR1031
source:
miRBase, original name:
ppt-MIR1031b
(
MI0005986
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCAATGCTCTCTGGAGCTTCT
miRNA*
AAGCTTCATAGGACATTGACT
mismatches:
3
bulges:
0
View larger
pre-miRNA
ACGGCGGAAGTTCTGGATCACAAATTTGC
TCAATGCTCTCTGGAGCTTCT
GTGCCGTTGCTTTGGGGAGTGTGGGTTTGTCCCCCTGGACAGGTCTGCAG
AACCTGACGGCCTTGGCCCTGATCTGCATCCCTCTCTTAATTGAACCTCAG
AAGCTTCATAGGACATTGACT
TGATTTGTGACCCTGTGATGAAGAAA
dot-bracket secondary structure
..(((....)))..((.(((((((((...
((((((..((.((((((((((
(.((((..((((..((...((..(..((((((....))))))..)..)).
..))..).)))..)))).................((......))....)))
)))))))).))..))))))..
.))))))))).)).............
SIMILARITIES
miRBase
ppt-MIR1031a
:
7e-16
PMRD
ppt-miR1031b
:
4e-110
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ppt-miR1031b
from PMRD (
MNEST051469
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"