ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1217
source: miRBase, original name: ppt-MIR1217 (MI0004716)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTATCATGTTGCAAATGGC miRNA* AATTTGAAGCATGATGTCAAG mismatches: 5 bulges: 0 |
pre-miRNA
TCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAA
CGGAAGTTGGA
dot-bracket secondary structure
(((..((((((.(((..((((..((((((((.(((((..(((((.(((.((((.....))).).))).)))))..))))).))))))))..))))..)))
))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAA
CGGAAGTTGGA
dot-bracket secondary structure
(((..((((((.(((..((((..((((((((.(((((..(((((.(((.((((.....))).).))).)))))..))))).))))))))..))))..)))
))))))..)))
SIMILARITIES| miRBase ppt-MIR1217: 2e-58 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
