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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004000
species:
Oryza sativa
miRNA family:
MIRf528
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATTCGTTGTACTAGGATGT
miRNA*
ATCCTAATACAACGAATCTGG
mismatches:
1
bulges:
0
View larger
pre-miRNA
AAGTATGCCTACTCCCTTCCATCCCCAAGAAAAAAAGGCAACCTAGTACTAGAATGTGACAC
ATCCTAATACAACGAATCTGG
ACATAGAGTATGTAC
AG
ATTCGTTGTACTAGGATGT
GTCACGTCGTAGTACGAGGTTGAGTTTTTTTTGGAATAGAGGGAGTAGATATTTACCCN
dot-bracket secondary structure
((((((..((((((((((......((((((((((....((((((.((((((..(((((((((
((((((.(((((((((((((.
(((((...))))).)
))
)))))))))).))))))))
)))))))..)))))).))))))..))))))))))....)))))))))))))))).....
SIMILARITIES
miRBase
osa-MIR1862g
:
0.00000000001
PMRD
osa-miRf10463-akr
:
0.00000000000004
microPC
miR1862
:
0.000009
UniProt
no hits
RFAM
MIR1122: 2e-25
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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