ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR399
source: miRBase, original name: ath-MIR399a (MI0001020)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GGGTAAGATCTCTATTGGCAGG mismatches: 1 bulges: 1 |
pre-miRNA
AAATGCATTACAGGGTAAGATCTCTATTGGCAGGAAACCATTACTTAGATCTTTGCATCTCTTTATGCATTGCTTTTAATTAGTGAGTTATCTGCCAAAG
GAGATTTGCCCTGTAATTCTTCT
dot-bracket secondary structure
....(.(((((((((((.(((((((.((((((((.((((((((.(((((.(..(((((......)))))..)..))))).))))).))).)))))))).)
))))))))))))))))).)....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, 454, MPSS, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[4] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
AAATGCATTACAGGGTAAGATCTCTATTGGCAGGAAACCATTACTTAGATCTTTGCATCTCTTTATGCATTGCTTTTAATTAGTGAGTTATCTGCCAAAG
GAGATTTGCCCTGTAATTCTTCT
dot-bracket secondary structure
....(.(((((((((((.(((((((.((((((((.((((((((.(((((.(..(((((......)))))..)..))))).))))).))).)))))))).)
))))))))))))))))).)....
SIMILARITIES| miRBase aly-MIR399a: 4e-50 PMRD ath-miR399a: 1e-65 microPC miR399: 8e-30 | UniProt no hits RFAM mir-399: 2e-64 |
Identical with: ath-miR399a from PMRD (MNEST047015) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, 454, MPSS, Solexa
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[4] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
