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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040099
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR401 (MI0001070)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGAAACTGGTGTCGACCGACA

miRNA*
 TCGCTCGACACTCATCGCT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 TATATAGACCCTAAAAACGTCCAGGGACTAATAATGCAAATATGGAAATCTTCTGGGGCAAACTTGAGCTTCTGAAAACTTGAAAGCGTTTAGGGTTTTT
GCTGGGCCGAAACTGGTGTCGACCGACACCAAGAGTGTGTCGCTCGACACTCATCGCTGATTCCTGAACCAAAATCGTTCTTAGTTTCCTTTTCCTTAGT
TTTTGCTCCAAAATGTCTCCTTATCTCCATTGTTGTCCCATTGCATAGAA

dot-bracket secondary structure
......(((.........)))..(((((.(((((((...(((.(((.((.((.(((((((((.(((((.....(.(((((.((.((((.....(((((..
..(.(((.((....((((((((.(((((((....).)))))).))))))))..))))).).....))))).....)))).))))))).).....))))).
.))))))))).)).)).))).)))...))))))))))))...........


SIMILARITIES
miRBase ath-MIR855: 5e-76

PMRD ath-miR401: 4e-141

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR401 from PMRD (MNEST047022)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



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