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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040105
species: Arabidopsis thaliana
miRNA family: MIR405
source: miRBase, original name: ath-MIR405d (MI0001077)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGAGTTGGGTCTAACCCATAACT

miRNA*
 TTATGGGTTGACCCAACTCATTT

mismatches: 0
bulges: 1
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pre-miRNA
 ACCCATCAAATGAAATGAGTTATGGGTTGACCCAACTCATTTTGTTAAATGAGTTGGGTCTAACCCATAACTCATTTAATCATAAA

dot-bracket secondary structure
.........(((((((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))...))))...


SIMILARITIES
miRBase ath-MIR405a: 3e-31

PMRD ath-miR405d: 1e-43

microPC no hits		UniProt no hits

RFAM MIR405: 9e-26

Identical with: ath-miR405d from PMRD (MNEST047028)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned

references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



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