miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040106
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR406 (MI0001078)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGAATGCTATTGTAATCCAG

miRNA*
 GAGACAGTAACTATTCAAAT

mismatches: 10
bulges: 1
View larger
pre-miRNA
 TAAAGTCTTAATTTTTAGTTATCACGATTTAGCACATATCAATCTATAGATTTGATTTTTCTTTTATTAGTTCTTAAATTTTGATTTGAGACAGTAACTA
TTCAAATAGAATGCTATTGTAATCCAGAATCCGAAAGAAACGAATCAAAAAAAAAAAAAACGAGTCTTCATAGTAAAAATCGATTAACTAAAAAGGATGG


dot-bracket secondary structure
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.............((((((((((..((((((..((
(((.....))))).))))))...........(....)...)))))))))))))).))))))))))))..))))...))))))..))))))))))))))..



SIMILARITIES
miRBase no hits

PMRD ath-miR406: 3e-86

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
evidence: cloned

references
[1] Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"



Liczniki na strone;