ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: miRBase, original name: ath-MIR416 (MI0001427)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTTCGTACGTACACTGTTCA miRNA* AACCCGGTTTGTACGTATGGACCGC mismatches: 0 bulges: 4 |
pre-miRNA
CGAAACTGAACCCGGTTTGTACGTATGGACCGCGTCGTTGGAATCCAAAAGAACCAGGTTCGTACGTACACTGTTCATCG
dot-bracket secondary structure
(((...(((((..(((..(((((((((((((...((.((((...))))..))....))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
CGAAACTGAACCCGGTTTGTACGTATGGACCGCGTCGTTGGAATCCAAAAGAACCAGGTTCGTACGTACACTGTTCATCG
dot-bracket secondary structure
(((...(((((..(((..(((((((((((((...((.((((...))))..))....))))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miR416: 4e-40 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR416 from PMRD (MNEST047035) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
