miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040117
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR426 (MI0001441)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGAAATTTGTCCTTACG

miRNA*
AAGGACATATGAGGAAAAAAT

mismatches: 5
bulges: 2

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pre-miRNA
GAGGGGGGACAATTTTTGGAAATTTGTCCTTACGGGTAGTACTAGAATACTTGTCCACATGACGATTTGAAATAACCGAAGGACATATGAGGAAAAAATA
AAATTAAACTC


dot-bracket secondary structure
(((.(....).((((((....((.(((((((.(((..((((......)))).(((.....)))............)))))))))).)).....)))))).
........)))



SIMILARITIES
miRBase no hits

PMRD ath-miR426: 2e-58

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR426 from PMRD (MNEST047040)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
evidence: Northern

references

[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"




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