ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR447
source: miRBase, original name: ath-MIR447a (MI0002407)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGGGACGAGATGTTTTGTTG miRNA* ACGAAGCATCTGTCCCCTGGT mismatches: 3 bulges: 1 |
pre-miRNA
CATTCTTAATATATAATACTACTTTTTCATCCATTAAACCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTT
TTTTTCTAGCCAACTCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTTGAGACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGC
TTTATGGAAGAAATTGTAGTATTATATATCGAGAGTG
dot-bracket secondary structure
((((((..((((((((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((..(((.((((((.((((((((.(((
...........))).))))))))..((((....((.....)).))))..)))))).)))..)))))).)))))))))))).)))))))))...)))))).
)).))))).))))..))))))))))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 5'RACE, 454, Solexa
deep sequencing data evidence
references
[1] Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD, J Exp Bot. 62:1611-1620(2011)., "MicroRNA activity in the Arabidopsis male germline"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[5] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"
CATTCTTAATATATAATACTACTTTTTCATCCATTAAACCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTT
TTTTTCTAGCCAACTCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTTGAGACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGC
TTTATGGAAGAAATTGTAGTATTATATATCGAGAGTG
dot-bracket secondary structure
((((((..((((((((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((..(((.((((((.((((((((.(((
...........))).))))))))..((((....((.....)).))))..)))))).)))..)))))).)))))))))))).)))))))))...)))))).
)).))))).))))..))))))))))))))..))))))
SIMILARITIES| miRBase ath-MIR447a: 8e-121 PMRD ath-miR447a: 8e-121 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 5'RACE, 454, Solexa
deep sequencing data evidence
references
[1] Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD, J Exp Bot. 62:1611-1620(2011)., "MicroRNA activity in the Arabidopsis male germline"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[5] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"
