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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040120
species: Arabidopsis thaliana
miRNA family: MIR447
source: miRBase, original name: ath-MIR447b (MI0002408)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGACGAGATGTTTTGTTG

miRNA*
 ACGAAGCATCTGTCCCCTGGT

mismatches: 3
bulges: 1
View larger
pre-miRNA
 CATTCTTAATATACAATACTACTTTTTCATCCATTAATCCCCTTACAATGTCGAGTAAACGAAGCATCTGTCCCCTGGTATTGTCTTCGAGCTTGGTGTG
TTTTTCTAGCCAGCCCCAAGTTCTCGAGTTGATCATTGTTTGTATTCTGACACATTATTTGGGGACGAGATGTTTTGTTGACTCGATATAAGAAGGGGCT
TTATGGAAGAAATTGTAGTATTATATATTGAGAATG

dot-bracket secondary structure
(((((((((((((.((((((((..((((.(((((.((.((((((...(((((((((.((((((((((((((((((..(((.((((...((((((((.(((
((.....)))..)).))))))))..((((....((.....)).)))).))))...)))..)))))).)))))))))))).)))))))))...)))))).)
).))))).))))..)))))))).)))))))))))))


SIMILARITIES
miRBase ath-MIR447a: 5e-110

PMRD ath-miR447b: 9e-133

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR447b from PMRD (MNEST047042)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 5'RACE, 454, Solexa
deep sequencing data evidence

references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[4] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"



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