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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040121
species: Arabidopsis thaliana
miRNA family: MIR447
source: miRBase, original name: ath-MIR447c (MI0002409)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCCTTACAATGTCGAGTAAA

miRNA*
 GACTCGATATAAGAAGGGGGT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 CATTCTTAATATACAATACTTCTTTTTCATGCATTAAGCCCCTTACAATGTCGAGTAAACAAAGCATGTGTCCGCTAATATTGTCTTCGAGCTTGGTATT
TTTGTATTCTGATACGGTATTTGGGGACGACATCTTTTGTTGACTCGATATAAGAAGGGGGTTTGTGGAAGAAATTGTAGTATTATATATCAAGAATG

dot-bracket secondary structure
(((((((.(((((.((((((.(..((((.(.(((.((.((((((...(((((((((.(((((((.((((((((.(.((((((((..((.((...(((((.
...))))))))).)))))))).).)))).)))).))))))).)))))))))...)))))).)).))).).))))..).)))))).))))).)))))))


SIMILARITIES
miRBase ath-MIR447c: 4e-110

PMRD ath-miR447c: 4e-110

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR447c from PMRD (MNEST047043)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD, J Exp Bot. 62:1611-1620(2011)., "MicroRNA activity in the Arabidopsis male germline"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[4] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"



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