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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040122
species: Arabidopsis thaliana
miRNA family: MIR447
source: miRBase, original name: ath-MIR447c (MI0002409)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGACGACATCTTTTGTTG

miRNA*
 ACAAAGCATGTGTCCGCTAAT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CATTCTTAATATACAATACTTCTTTTTCATGCATTAAGCCCCTTACAATGTCGAGTAAACAAAGCATGTGTCCGCTAATATTGTCTTCGAGCTTGGTATT
TTTGTATTCTGATACGGTATTTGGGGACGACATCTTTTGTTGACTCGATATAAGAAGGGGGTTTGTGGAAGAAATTGTAGTATTATATATCAAGAATG

dot-bracket secondary structure
(((((((.(((((.((((((.(..((((.(.(((.((.((((((...(((((((((.(((((((.((((((((.(.((((((((..((.((...(((((.
...))))))))).)))))))).).)))).)))).))))))).)))))))))...)))))).)).))).).))))..).)))))).))))).)))))))


SIMILARITIES
miRBase ath-MIR447c: 4e-110

PMRD ath-miR447c: 4e-110

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR447c from PMRD (MNEST047043)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 5'RACE, 454

references
[1] Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD, J Exp Bot. 62:1611-1620(2011)., "MicroRNA activity in the Arabidopsis male germline"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[4] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"



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