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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST040122
species: Arabidopsis thaliana
miRNA family: MIR447
source: miRBase, original name: ath-MIR447c (MI0002409)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGACGACATCTTTTGTTG

miRNA*
 ACAAAGCATGTGTCCGCTAAT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CATTCTTAATATACAATACTTCTTTTTCATGCATTAAGCCCCTTACAATGTCGAGTAAACAAAGCATGTGTCCGCTAATATTGTCTTCGAGCTTGGTATT
TTTGTATTCTGATACGGTATTTGGGGACGACATCTTTTGTTGACTCGATATAAGAAGGGGGTTTGTGGAAGAAATTGTAGTATTATATATCAAGAATG

dot-bracket secondary structure
(((((((.(((((.((((((.(..((((.(.(((.((.((((((...(((((((((.(((((((.((((((((.(.((((((((..((.((...(((((.
...))))))))).)))))))).).)))).)))).))))))).)))))))))...)))))).)).))).).))))..).)))))).))))).)))))))


SIMILARITIES
miRBase ath-MIR447c: 4e-110

PMRD ath-miR447c: 4e-110

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR447c from PMRD (MNEST047043)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 5'RACE, 454

references
[1] Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD, J Exp Bot. 62:1611-1620(2011)., "MicroRNA activity in the Arabidopsis male germline"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[4] Allen E, Xie Z, Gustafson AM, Carrington JC, Cell. 121:207-221(2005)., "microRNA-directed phasing during trans-acting siRNA biogenesis in plants"



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