ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR773
source: miRBase, original name: ath-MIR773 (MI0005103)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGCTTCCAGCTTTTGTCTC miRNA* GGCAATAGCTTGAGCAAATA mismatches: 2 bulges: 1 |
pre-miRNA
AGGAGGCAATAGCTTGAGCAAATAATTGATTGCAGAAGTCCATCGACTAAAGCTGTCACCTGTTTGCTTCCAGCTTTTGTCTCCT
dot-bracket secondary structure
(((((((((.((((.(((((((((..((((.((...((((....))))...)).))))..)))))))))..)))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: MPSS, Northern, 454, cloned
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
AGGAGGCAATAGCTTGAGCAAATAATTGATTGCAGAAGTCCATCGACTAAAGCTGTCACCTGTTTGCTTCCAGCTTTTGTCTCCT
dot-bracket secondary structure
(((((((((.((((.(((((((((..((((.((...((((....))))...)).))))..)))))))))..)))).)))))))))
SIMILARITIES| miRBase ath-MIR773b: 1e-33 PMRD ath-miR773: 4e-43 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miR773 from PMRD (MNEST047046) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: MPSS, Northern, 454, cloned
references
[1] Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
