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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040126
species: Arabidopsis thaliana
miRNA family: MIR773
source: miRBase, original name: ath-MIR773b (MI0014666)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGATTCCAGCTTTTGTCTC

miRNA*
 GGCAATAACTTGAGCAAACA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 GGTTGAAGGTGGCAATAACCTCAAATATATCAGAGGGTGTAGATACTCAACGACTATAGGAGGCAATAACTTGAGCAAACAATTGATTGCAGAAATCCAT
CGACTAAAGCTGTCACCTGTTTGATTCCAGCTTTTGTCTCCTTACCTGTTGAGTGTCTAAACTCTCTGGTACGTTCATAGTTGTTGCTGCCTTTCGCT

dot-bracket secondary structure
(((.(((((..((((((((....((..(((((((((((.(((((((((((((.....(((((((((...((.(((((((((..((((.((.....((...
.)).....)).))))..)))))).))).))...)))))))))....))))))))))))).)))))))))))..))....))))))))..))))).)))


SIMILARITIES
miRBase ath-MIR773: 4e-33

PMRD ath-miR773: 4e-33

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"



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