miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040128
species: Arabidopsis thaliana
miRNA family: MIR774
source: miRBase, original name: ath-MIR774b (MI0014668)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAGATGAAGATATGGGTGAT

miRNA*
 TTTATGTTAGCAATTTAATTCTTTTTCATCCATATTTTCATCTCGAA

mismatches: 0
bulges: 26
View larger
pre-miRNA
 GAGTGTTGATTATATGGATTCATTTGAGATGAAGATATGGGTGATGATCAATGCTTACGATTTTGGTCAATTTATGTTAGCAATTTAATTCTTTTTCATC
CATATTTTCATCTCGAATTTAATCTTTAAAAAAGCGTTT

dot-bracket secondary structure
....(((........(((((.((((((((((((((((((((((((((((((..(....)...))))))).....((....)).............)))))
))))))))))))))))))..))))).......)))....


SIMILARITIES
miRBase aly-MIR774: 0.000002

PMRD ath-miRf10055-akr: 0.0001

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC, Plant Cell. 22:1074-1089(2010)., "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana"



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