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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040161
species: Arabidopsis thaliana
miRNA family: MIR838
source: miRBase, original name: ath-MIR838 (MI0005394)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTCTTCTACTTCTTGCACA

miRNA*
 TGCAAGAAGGAGAAGCAAAGT

mismatches: 2
bulges: 0
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pre-miRNA
 TACTTTTCTAATATCACGAGGACTTACATGGCCTCAAGTCACCTGTGGTGTTGTGCAAGAAGGAGAAGCAAAGTCTGTCTATGTATTATGAGATAGCTAC
TTCTATGGCTAGGATATATGTTGTACAAGACCGGCTTTTCTTCTACTTCTTGCACAACCTGAGGTTATTGAGGCTATACAAGTCTTCTTCTATAATGTTA
TTTATTA

dot-bracket secondary structure
.................((((((((..((((((((((...((((.(((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((.
.....))))))...))))....))))))))).)))))).))))).))))))))))))))))))))..))))))))))..)))))))).............
.......


SIMILARITIES
miRBase aly-MIR838: 5e-54

PMRD ath-miR838: 2e-115

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR838 from PMRD (MNEST047067)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence

references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"



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