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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040163
species: Arabidopsis thaliana
miRNA family: MIR840
source: miRBase, original name: ath-MIR840 (MI0005396)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACACTGAAGGACCTAAACTAAC

miRNA*
TTGTTTAGGTCCCTTAGTTTCT

mismatches: 3
bulges: 0

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pre-miRNA
CGTAAAGCAGGTGATTCACCAATTTAGGTTTACATCCACAGTGTGGAAGACACTGAAGGACCTAAACTAACAAAGGTAAACGGCTCAGTGTGCGGGGTAT
TACACTCGGTTTAATGTCTGAATGCGATAATCCGCACGATGATCTCTTTATCTTTGTTTGTTTAGGTCCCTTAGTTTCTTCTATACCGTGAATCCAATCC
TGTATTGGATGAGCTGGTTTATGACC


dot-bracket secondary structure
((((((.(((....(((((((((.((((........(((.((((((((((.(((((.((((((((((.((((((((((((.((.(((.(((((((..(((
..((.((((........)))).))..)))..))))))).))).)).)))))))))))).)))))))))).))))).)))))))))).)))........))
)).))))).))))))).))))))...



SIMILARITIES
miRBase aly-MIR840: 1e-79

PMRD ath-miR840: 8e-127

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR840 from PMRD (MNEST047069)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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