ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR845_1
source: miRBase, original name: ath-MIR845a (MI0005401)
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCTCTGATACCAATTGATG miRNA* TCGATTGCTGTCAGAGCCACG mismatches: 2 bulges: 0 |
pre-miRNA
AGATAAGGGATTGCACGATTTCTCAATAGTTCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGA
TACCAATTGATGCTATGGAAACATCGATATTGCCTGATTCCGTGTTTCCTTTTACCTTGTTGT
dot-bracket secondary structure
....((((((..(((((...((.((((......((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).))))))))
)).)))))))))..))))))))..))))))))...))...))))).))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
AGATAAGGGATTGCACGATTTCTCAATAGTTCCGTCGCTGCGTTTCCATCACGTCGATTGCTGTCAGAGCCACGCCTATGAAGAATTTGTGCGGCTCTGA
TACCAATTGATGCTATGGAAACATCGATATTGCCTGATTCCGTGTTTCCTTTTACCTTGTTGT
dot-bracket secondary structure
....((((((..(((((...((.((((......((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).))))))))
)).)))))))))..))))))))..))))))))...))...))))).))))))...........
SIMILARITIES| miRBase aly-MIR845a: 1e-41 PMRD ath-miR845a: 2e-89 microPC no hits | UniProt no hits RFAM MIR845_1: 1e-41 |
Identical with: ath-miR845a from PMRD (MNEST047075) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, cloned
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
