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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040171
species: Arabidopsis thaliana
miRNA family: MIR846
source: miRBase, original name: ath-MIR846 (MI0005402)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAATTGAAGTGCTTGAATT

miRNA*
TTCAAGGACTTCTATTCAGAA

mismatches: 3
bulges: 0

View larger
pre-miRNA
CAAACATCTTGAATCCGTTGAGGTTGATCACGATGATGCCACATCCGGTTTCATTCAAGGACTTCTATTCAGAACAAACTTCATGATTTCTGAACTAATT
GGATATGATAAATGGTAACAAGTATTCACTTGCATTCAAGGGACAAAAAATCATTGGGATATATGATTATGACAAACACGATTGGAAGCTGAATGGTTGC
GGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAAACTTCTTACTTTTATCATATCCCATCAGCTCGAAAGTCTTGATGTTAGTTTTGAATTGAAGTG
CTTGAATT
ACACCAGATTTATTGTGCTCGTGTATCCCGGTAAATTCGACTAATGACCAA


dot-bracket secondary structure
....(((.(((((((((..((...(((.((((((((......(((.(((.(.(((((((.(((((.(((((((((.(((.(((.(((((.(((.((.((.
((((((((((((.(((((.((((.(((((((((...............((((((........))))))...........(((((....((.(.((.((((
.....)))).)).).))....))))).))))))))).)))).))))))))))))))))).)).)).))).))))).))).))).))))))))).))))).
))))))).
).))).))))))))))).)))....)).)))...))))))...))).....



SIMILARITIES
miRBase aly-MIR846: 4e-105

PMRD ath-miR846: 0

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miR846 from PMRD (MNEST047077)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned, Northern, Solexa

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[3] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[4] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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