miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040174
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR849 (MI0005404)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAACTAAACATTGGTGTAGTA

miRNA*
 CTAGACCAATGTTTAGTTAGT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TAATTTGGTTAAATGTTTTCAACATTTTTTATTTATTTATGATTGGACAACTACTAGACCAATGTTTAGTTAGTACATCCAATGTTATAAGTACAAAATA
ATATGTGTTGGATCTACTAACTAAACATTGGTGTAGTAGTTGTCCGACTCTATTGTTGGGAGCGAGAAGATTGATCCCTGGTTTAATTG

dot-bracket secondary structure
.............((((..(((((................((((((((((((((((.((((((((((((((((((.((((((..(...............
....)..)))))).)))))))))))))))))).)))))))))))))).))...)))))..))))....((((((.(....).)))))).


SIMILARITIES
miRBase no hits

PMRD ath-miR849: 8e-105

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR849 from PMRD (MNEST047080)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"



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