miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040175
species: Arabidopsis thaliana
source: miRBase, original name: ath-MIR850 (MI0005405)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAGATCCGGACTACAACAAAG

miRNA*
 TAGTTGTCGTCGTATCTTTGT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TTTTAGATAGTGTTATGTATTTATTTCTTACCTATAGAAACCTGTCAGCTAAGATCCGGACTACAACAAAGCACGTCTACTCTACTATATTCTTTTGCGA
TAATCAATAGATTCTTCTAACATCGTAAAGGAAGACAAAAGAGTATACATACTTAGTTGTCGTCGTATCTTTGTTGAGAAGTTTCTAAATGGCACATAGA
AAGTACATAAAACTATATGAA

dot-bracket secondary structure
.((((.(((((.((((((((...(((((..((..(((((((.(.(((((.(((((.((.((.(((((.(((...((.((((((......(((((((((((
(......((((....))))..))))))))))))......)))))).))...))).))))).)))).))))).))))).).)))))))...)).....)))
)))))))))).))))).))))


SIMILARITIES
miRBase no hits

PMRD ath-miR850: 8e-124

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-miR850 from PMRD (MNEST047081)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"



Liczniki na strone;