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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040176
species: Arabidopsis thaliana
miRNA family: MIR851
source: miRBase, original name: ath-MIR851 (MI0005406)

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCGGTTCGCGATCCACAAG

miRNA*
TGTGGGTGGCAAACAAAGACG

mismatches: 5
bulges: 0

View larger
pre-miRNA
TTTTCTTTCTTTTCCTTTTCGTTTGATTTTGGAAAGCAAGGGACTGTCGTCTCGGTTCGCGATCCACAAGTAATCTTTTGTGGAGATTATGAAAACAATC
ATCACGAGAGGCTACGTGTGGGTGGCAAACAAAGACGACAATCCCTATTCCAGTTCCATCAGAACTTGAAATATCATGTGAACT


dot-bracket secondary structure
.................((((..((((...........(((((.((((((((..(((.((.(((((((.(((..((((((((..((((.(....).))))
..))))))))..))).))))))).)).)))..)))))))).))))).(((.(((((.....))))).)))..))))..))))..



SIMILARITIES
miRBase ath-MIR851: 6e-84

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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