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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST004028
species:
Oryza sativa
miRNA family:
MIRf592
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCAAGTTGTTCTTGGCTACA
miRNA*
CAGCCAAGGATGACTTGCCGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GGCGGCCTGACATTGGGATCGGAGGCCATGGTG
CAGCCAAGGATGACTTGCCGA
TCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGATCCATCCAT
CAATT
GGCAAGTTGTTCTTGGCTACA
TCTTGGCCCCTGCTCCTCATGTAAGGCCGG
dot-bracket secondary structure
..((((((.((((.((((.(((.(((((.((((
.((((((((((((((((((((
(.(((..(((((((.(((((...)))))...)))))))......))
).)))
)))))))))))))))))).))
)).))))).))).)))).)))).)))))).
SIMILARITIES
miRBase
osa-MIR169a
:
2e-77
PMRD
osa-miR169a
:
2e-77
microPC
miR169
:
5e-38
UniProt
no hits
RFAM
MIR169_2: 1e-51
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record