ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR393
source: miRBase, original name: bna-MIR393 (MI0005772)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCTCTTCGGA mismatches: 1 bulges: 1 |
pre-miRNA
TCCAAAGGGATCGCATTGATCCTAATCAAGCTGAGTTATTCCCGAATAATTATTTTAATTTTTTCTCAATGGAAAGATAGAAAAAAAAAATTTTGCTTCG
TTTTCCGGATCATGCGATCTCTTCGGA
dot-bracket secondary structure
(((.((((((((((((.(((((.(((.((((..(((((((....))))))).((((.((((((((.....)))))))).))))...........)))).)
))....))))))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
TCCAAAGGGATCGCATTGATCCTAATCAAGCTGAGTTATTCCCGAATAATTATTTTAATTTTTTCTCAATGGAAAGATAGAAAAAAAAAATTTTGCTTCG
TTTTCCGGATCATGCGATCTCTTCGGA
dot-bracket secondary structure
(((.((((((((((((.(((((.(((.((((..(((((((....))))))).((((.((((((((.....)))))))).))))...........)))).)
))....))))))))))))))))).)))
SIMILARITIES| miRBase ath-MIR393b: 1e-16 PMRD bna-miR393: 4e-50 microPC miR393: 0.000006 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
