ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR396
source: miRBase, original name: bna-MIR396a (MI0005773)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAASAAAGCTGTGGGA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCCTTATTTTASAGCGAAATTAAATAACTAAAAATCTCTAACATTTAACACTCTASAAAAAAAAAGC
TCAASAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((.((((.(((((........(((......((.((..(((......)))...)).))......)))........))))).)))).
)))).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
TTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCCTTATTTTASAGCGAAATTAAATAACTAAAAATCTCTAACATTTAACACTCTASAAAAAAAAAGC
TCAASAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((.((((.(((((........(((......((.((..(((......)))...)).))......)))........))))).)))).
)))).))))))))))))
SIMILARITIES| miRBase ath-MIR396b: 0.0000000000002 PMRD bna-miR396a: 2e-44 microPC miR396: 0.0000002 | UniProt no hits RFAM MIR396: 0.000000000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: RTPCR
references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"
