ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR156
source: miRBase, original name: rco-MIR156e (MI0013374)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* TGCTCTCTCCTCTTCTGTCATC mismatches: 0 bulges: 1 |
pre-miRNA
AATGTTGACAGAAGAGAGAGAGCACAACCCGGCATTAGGCTAAAGAGTCTTTGCCTTTGTTGGGAGTGTGCTCTCTCCTCTTCTGTCATCATCAC
dot-bracket secondary structure
.(((.(((((((((((((((((((((.(((((((..((((.((((...)))))))).)))))))..)))))))))).))))))))))).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AATGTTGACAGAAGAGAGAGAGCACAACCCGGCATTAGGCTAAAGAGTCTTTGCCTTTGTTGGGAGTGTGCTCTCTCCTCTTCTGTCATCATCAC
dot-bracket secondary structure
.(((.(((((((((((((((((((((.(((((((..((((.((((...)))))))).)))))))..)))))))))).))))))))))).)))...
SIMILARITIES| miRBase gma-MIR156f: 1e-27 PMRD gma-miR156b: 1e-27 microPC miR156: 8e-20 | UniProt no hits RFAM mir-156: 8e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
