ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR157
source: miRBase, original name: rco-MIR156f (MI0013375)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTTTTTTCTTCTGTCAACT mismatches: 1 bulges: 1 |
pre-miRNA
TTTTGTTGACAGAAGATAGAGAGCACAACTTAACATACCCAACGACAGATTTGTGTATGTGAAGTTTTGTGCTCTTTTTTCTTCTGTCAACTTATAT
dot-bracket secondary structure
....((((((((((((.((((((((((((((.((((((.(((........))).)))))).))))..))))))))))..))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTTTGTTGACAGAAGATAGAGAGCACAACTTAACATACCCAACGACAGATTTGTGTATGTGAAGTTTTGTGCTCTTTTTTCTTCTGTCAACTTATAT
dot-bracket secondary structure
....((((((((((((.((((((((((((((.((((((.(((........))).)))))).))))..))))))))))..))))))))))))......
SIMILARITIES| miRBase tcc-MIR156f: 0.00000000000002 PMRD vvi-miR156f: 0.0000000000003 microPC miR157: 0.00002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
