ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR166
source: miRBase, original name: rco-MIR166a (MI0013386)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
TAAGGGGAATGTTGTCTGGTTCAAGGCCTACCTATTGATCTGTTTCAGTTTCATTCAATATACTGAAAAATCTGTATATGGGAAACTATCCTGTGGTCGA
TTTGATCATTTCTTAGGATCTCCTCGGACCAGGCTTCATTCCCCTTAAT
dot-bracket secondary structure
(((((((((((..(((((((((.(((....((((.(((((..(((((((............)))))))((((....(((((((.....)))))))...))
)).))))).....))))....))).)))))))))..)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TAAGGGGAATGTTGTCTGGTTCAAGGCCTACCTATTGATCTGTTTCAGTTTCATTCAATATACTGAAAAATCTGTATATGGGAAACTATCCTGTGGTCGA
TTTGATCATTTCTTAGGATCTCCTCGGACCAGGCTTCATTCCCCTTAAT
dot-bracket secondary structure
(((((((((((..(((((((((.(((....((((.(((((..(((((((............)))))))((((....(((((((.....)))))))...))
)).))))).....))))....))).)))))))))..)))))))))))..
SIMILARITIES| miRBase ptc-MIR166l: 0.0000005 PMRD ptc-miR166l: 0.0000005 microPC miR166: 0.000002 | UniProt no hits RFAM mir-166: 9e-80 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
