ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR166
source: miRBase, original name: rco-MIR166b (MI0013387)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
TGAGGGGAATGTTGTCTGGCTCGAGGTCACTAATTAGATCTATGATTTTATTTTTGCTTTTAAGATAGATCGTTGATCGTATTGTTAGTGACGTCGGACC
AGGCTTCATTCCCCCCAAT
dot-bracket secondary structure
((.((((((((..((((((..(((.(((((((((..((((.(((((((.(((((.......)))))))))))).)))).....))))))))).)))..))
))))..)))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TGAGGGGAATGTTGTCTGGCTCGAGGTCACTAATTAGATCTATGATTTTATTTTTGCTTTTAAGATAGATCGTTGATCGTATTGTTAGTGACGTCGGACC
AGGCTTCATTCCCCCCAAT
dot-bracket secondary structure
((.((((((((..((((((..(((.(((((((((..((((.(((((((.(((((.......)))))))))))).)))).....))))))))).)))..))
))))..)))))))).))..
SIMILARITIES| miRBase ptc-MIR166a: 7e-18 PMRD ptc-miR166a: 7e-18 microPC miR166: 0.000000000006 | UniProt no hits RFAM mir-166: 5e-62 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
