ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: miR156b-3p
source: miRBase, original name: ahy-MIR156b (MI0015333)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTAAGCTTCTGTCATC miRNA* TGACAGAAGATAGAGAGCAC mismatches: 2 bulges: 1 |
pre-miRNA
GGAGGCACTATTGGTAGAGTTGTTGACAGAAGATAGAGAGCACAAAAGATGATATGCATATAGATATATATAGTCTGCATTTTATTCCTTTGTGCTCTCT
AAGCTTCTGTCATCACTCTTCAGCCTCTATTTCTA
dot-bracket secondary structure
((((((.....(((.(((((.(.(((((((((.(((((((((((((.(((((.(((((((((......))))...))))).)))))..))))))))))))
)..))))))))).))))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GGAGGCACTATTGGTAGAGTTGTTGACAGAAGATAGAGAGCACAAAAGATGATATGCATATAGATATATATAGTCTGCATTTTATTCCTTTGTGCTCTCT
AAGCTTCTGTCATCACTCTTCAGCCTCTATTTCTA
dot-bracket secondary structure
((((((.....(((.(((((.(.(((((((((.(((((((((((((.(((((.(((((((((......))))...))))).)))))..))))))))))))
)..))))))))).))))))))))))))).......
SIMILARITIES| miRBase ahy-MIR156b: 1e-72 PMRD mtr-miR156e: 0.000000000000007 microPC miR157: 0.0000000004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
