miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST040405
species: Arachis hypogaea
miRNA family: MIR408
source: miRBase, original name: ahy-MIR408 (MI0015340)

Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATGCACTGCCTCTTCCCTGGC

miRNA*
TGGGAACAGGCAGAGCATGA

mismatches: 3
bulges: 1

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pre-miRNA
GAAGAAGAGATGACAAAGAACTGGGAACAGGCAGAGCATGAATGGAACTATCAATAGACACATTTTGTTCATTGACGCTCATGCACTGCCTCTTCCCTGG
CTCTCTCTTTCTTTTTCCTTCT

dot-bracket secondary structure
((((((((((.((...(((.(((((((.((((((.((((((.((......(((((..(((.....)))..))))))).)))))).)))))).))))).))
.))).)))))))))))).....

UniProt no hits

RFAM MIR408: 0.000000007

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"