ABOUT THIS RECORDspecies: Arachis hypogaea
source: miRBase, original name: ahy-MIR3520 (MI0015353)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGGAGACGTTTGAATTATC miRNA* GATGGTGAATATCTTATCTTAT mismatches: 4 bulges: 2 |
pre-miRNA
GACCTGGGTCCTCTATTTATAGGTGATGGTGAATATCTTATCTTATCTTATTTGGTTAAGATAAGGGAGACGTTTGAATTATCCTATGGAGACATTTNAA
TTCGAAAGTTGGTTA
dot-bracket secondary structure
((((...(((.....((((((((((((..((((..((((.((((((((((......))))))))))))))..)))).)))).))))))))))).......
..(....)..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GACCTGGGTCCTCTATTTATAGGTGATGGTGAATATCTTATCTTATCTTATTTGGTTAAGATAAGGGAGACGTTTGAATTATCCTATGGAGACATTTNAA
TTCGAAAGTTGGTTA
dot-bracket secondary structure
((((...(((.....((((((((((((..((((..((((.((((((((((......))))))))))))))..)))).)))).))))))))))).......
..(....)..)))).
SIMILARITIES| miRBase ahy-MIR3520: 4e-59 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
