miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040433
species: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159b (MI0007206)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGAGTGAAGGGAGCTCCA

miRNA*
 GAGTTCCCTGCACTCCAAGTC

mismatches: 2
bulges: 0
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pre-miRNA
 AAACCCAACTTGGAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCG
TTCGAAGTCAAGGGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTCCAGAGGGTATTC

dot-bracket secondary structure
..((((...((((((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......)
)).)))))))..))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))))).))))....


SIMILARITIES
miRBase gma-MIR159c: 0.00000000001

PMRD gma-miR159b: 5e-103

microPC miR159: 4e-91		UniProt no hits

RFAM MIR159: 0.00000001

Identical with: miR159 from microPC (MNEST046067)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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