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Species belonging to selected taxon:

Glycine soja, Glycine max



ABOUT THIS RECORD

ID: MNEST040433
species: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159b (MI0007206)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGAGTGAAGGGAGCTCCA

miRNA*
 GAGTTCCCTGCACTCCAAGTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AAACCCAACTTGGAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCG
TTCGAAGTCAAGGGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTCCAGAGGGTATTC

dot-bracket secondary structure
..((((...((((((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......)
)).)))))))..))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))))).))))....


SIMILARITIES
miRBase gma-MIR159c: 0.00000000001

PMRD gma-miR159b: 5e-103

microPC miR159: 4e-91		UniProt no hits

RFAM MIR159: 0.00000001

Identical with: miR159 from microPC (MNEST046067)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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