ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAAAAGATTCGTCTCGCGA miRNA* GCGGGACGAATTTTTTAAGCC mismatches: 2 bulges: 0 |
pre-miRNA
TCATAAATGAAAGCTAATCTGCGGGACGAATTTTTTAAGCCTAATTAATCCATAATTATGAAAAGTTTACTGTAGCATCACATTGTCAAATCATGGTGTA
ATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGGTTATA
dot-bracket secondary structure
(((....)))..((((((.(((((((((((((((((.((.(((((((..((((.(((.(((.((..................)).)))))).))))..))
))))).)).))))))))))))))))).))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATAAATGAAAGCTAATCTGCGGGACGAATTTTTTAAGCCTAATTAATCCATAATTATGAAAAGTTTACTGTAGCATCACATTGTCAAATCATGGTGTA
ATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGGTTATA
dot-bracket secondary structure
(((....)))..((((((.(((((((((((((((((.((.(((((((..((((.(((.(((.((..................)).)))))).))))..))
))))).)).))))))))))))))))).))))))...........
SIMILARITIES| miRBase osa-MIR445a: 1e-75 PMRD osa-miR445a: 1e-75 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
