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Species belonging to selected taxon:
Glycine max
ABOUT THIS RECORD
ID:
MNEST040443
species:
Glycine max
miRNA family:
MIR167
source:
miRBase, original name:
gma-MIR167c
(
MI0007210
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GGTCATCTTGCAGCTTCAAT
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTTGAGAGGT
TGAAGCTGCCAGCATGATCTG
GTAAATCACATACTTTTTTTTTTCTCACCTCTCATGCCTAATTTTTAAGCACCAGTCATTAGAGAAAAT
AATGGTGAAAAATCCATCTATTCAATTTTTTTTTTCAAATTCAAGGTTTCCAGTATGTATCACTAATGGTGAAAAAAGTGATGGAATTTTGTAGAACATG
GGTTAAATTTACTTTTTTTTTTTTTGAGTTTTCATTTTCTTCAAGTTTCTGAGCCAAGAAATAAAAGAGACTTATAAATTGGAATTAATACTTAAAGGAA
ACCCACCAGAAGGGCAATTTGGTTATCATAAGATGTGGTTTCCATCA
GGTCATCTTGCAGCTTCAAT
CACTCAAT
dot-bracket secondary structure
.(((((.(((
(((((((((.((.((((((((
(((((((((((.(((....(((((((....((..(((.((.....)).)))..))......))))))).
.....(((((((..................))))))).......(((..((((..(((....((..(((((.(((((((((...(((((((.....)).)
))))....)))))))))(((((((((((((((((.(((....((((((((...............))))))))..))).))))).....)))))))))))
)..)))))..)).)))..))))..)))..))))))))))))..))))
)))))))).)))))))))))
).))))).
SIMILARITIES
miRBase
vvi-MIR167a
:
0.00000000002
PMRD
gma-miR167c
:
2e-156
microPC
miR167
:
0.00002
UniProt
no hits
RFAM
MIR167_1: 0.000000000006
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"