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Species belonging to selected taxon:
Glycine soja
,
Glycine max
ABOUT THIS RECORD
ID:
MNEST040499
species:
Glycine max
source:
miRBase, original name:
gma-MIR1517
(
MI0007230
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGTCTTGGTCAATGTCGTTCGAAA
miRNA*
TTGACCGACATTAGACATGACTAT
mismatches:
3
bulges:
2
View larger
pre-miRNA
GCTAGGTATTT
TTGACCGACATTAGACATGACTAT
TTTTAGTCGACATTGACTAAGTTTTTACAGTCGACATCCACTAGAGTTTTTTCGATCGACATCGG
TCAAAGCAATTTTTTAGCCAACATCAATCAAGGCTATTTTATAGCCGATGTTGGGTAGGGTTTTTTATTCGACATCAGTCAGGGCTATTTTTTAGCCAAC
TTCGACTAGAGATTTTTCAGCCAACATTGACTAATGATGTTTTTCAGTCGACATCGGGTAGGTTCTATTGGTCGGCATCGACCAAGCTATTTTTTAGTCG
ATACTAGATAGATTTTTTTGTCAACGCCTGCTAGGATTTTTTAGGTTGACGTTGGCTAAAAAT
AGTCTTGGTCAATGTCGTTCGAAA
AAACCCTAGT
dot-bracket secondary structure
((((((..(((
((((.(((((((.(((..((((((
(((((((((((..(((((..((....)).(((((...........(((((...(((((....)))
)))))))....(((((.((((((((......((((((...)))))))))))))).)))))........)))))...))))).(((((.....)))))...
.((((((.((((..((..(((....(((((((((.((((((........))))))............(((((((....)))))))........)))))))
))....((((((....)))))).......)))..))..)))).)))))).)))))))))))))
))))...)))))))))).))))))
)...))))))
SIMILARITIES
miRBase
no hits
PMRD
gma-miR1517
:
0
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"