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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004050
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTCGTCTCGCGGTTTCCAGA

miRNA*
AGGAAATCACGAGACGAATCT

mismatches: 4
bulges: 0

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pre-miRNA
TATTAAATATAGGTAAATAAAAAAACTAATTGCACAATTAGGCAGGAAATCACGAGACGAATCTTTTAAGCCTAATTAGTCCATGATTAGCCATAAGTGC
TACAGTAACCCACATGTGCTAATGACGGATTAATTAGGCTCAAAAGATTCGTCTCGCGGTTTCCAGACGAGTTATGAAATTAGTTTTTTTATTCGTGTCC
AAAAATT


dot-bracket secondary structure
...........((..((((((((((((((((.((.((((.....(((((((.(((((((((((((((.((((((((((((((...((((((.(((.(((.
..........))).)))))))))...)))))))))))))).))))))))))))))).))))))).....)))).)).)))))))))))))))).....))
.......



SIMILARITIES
miRBase osa-MIR442: 0.00000000000001

PMRD osa-miRf10240-akr: 5e-48

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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