miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004055
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAGGCTCAAAAGATTCGTCT

miRNA*
ACGAATCTATTAAGCCTAATT

mismatches: 2
bulges: 0

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pre-miRNA
TAGACTAATAACAAAACAAATTACATATTCCGCCTGTAAACTGCGAGACGAATCTATTAAGCCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCAT
CACATTGTCAAATCATGGCGTAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTGGTTTTTTTTCCGTCCA


dot-bracket secondary structure
..(((....((.(((((.((((.((((....((.((((((.((((((((((((((.((.((((((((((..((((.(((.(((((((((......)))))
....))))..))).))))..)))))))))).)).)))))))))))))).)))))).))....)))).)))).))))).))...)))..



SIMILARITIES
miRBase osa-MIR2124a: 9e-74

PMRD osa-miR442: 5e-63

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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